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Report for Sequence Feature Glyma20g29230

Feature Type:gene_model
Chromosome:Gm20
Start:38136190
stop:38147217
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma20g29230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G51820AT Annotation by Michelle Graham. TAIR10: phosphoglucomutase | chr5:21063531-21067933 REVERSE LENGTH=623 SoyBaseE_val: 0ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0005992GO-bp Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006874GO-bp Annotation by Michelle Graham. GO Biological Process: cellular calcium ion homeostasis SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009590GO-bp Annotation by Michelle Graham. GO Biological Process: detection of gravity SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019255GO-bp Annotation by Michelle Graham. GO Biological Process: glucose 1-phosphate metabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019388GO-bp Annotation by Michelle Graham. GO Biological Process: galactose catabolic process SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0004614GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoglucomutase activity SoyBaseN/AISS
GO:0016868GO-mf Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity, phosphotransferases SoyBaseN/AISS
KOG0625 KOG Phosphoglucomutase JGI ISS
PTHR22573Panther PHOSPHOHEXOMUTASE FAMILY MEMBER JGI ISS
PTHR22573:SF5Panther PHOSPHOGLUCOMUTASE JGI ISS
PF00408PFAM Phosphoglucomutase/phosphomannomutase, C-terminal domain JGI ISS
PF02878PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JGI ISS
PF02879PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JGI ISS
PF02880PFAM Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JGI ISS
UniRef100_G7IC40UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglucomutase n=1 Tax=Medicago truncatula RepID=G7IC40_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1NGN4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NGN4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma20g29230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g29230
ParalogEvidenceComments
Glyma10g38590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g29230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.20g153600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma20g29230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma20g29230
>Glyma20g29230.1   sequence type=CDS   gene model=Glyma20g29230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTCTTGTAAACTTGACTGCTTCATTCTCCCTGCCTATAAACCCCAAAACTCCATTCTCCCACTTTCAATCCAACCTTCCTCCTTCCTCCCATCTCCTTCTTCCTTCAAGCCTCAAAAGCTTCCCTTCGGAATCCGCTATGGTTCTACCATCAGAGTCACTTCATCATCCTCAACCCCTTCCACAACCATTGCCGAACCTGAAGGCATTAAGATTAAATCGATTCCAACCAAGCCCATCGAGGGACAAAAGACTGGAACCAGTGGGCTTCGAAAGAAGGTGAAAGTGTTTATGCAAGACAATTACCTCGCAAATTGGATCCAGGCCCTGTTTAATTCATTGCCTCCCGAGGATTACAAGAATGGCTTGTTGGTGTTGGGAGGTGATGGGCGATACTTTAATCGGGAAGCTGCACAGATAATAATCAAAATTGCTGCTGGAAATGGTGTTGGAAAAATTCTAGTTGGACAGGAAGGTATTTTGTCAACACCAGCCGTTTCTGCTGTAATAAGAAAGAGAAAGGCAAATGGTGGATTTATTATGAGTGCAAGCCATAATCCTGGCGGACCTGAATATGATTGGGGTATTAAGTTTAATTACAGCAGCGGACAACCTGCACCAGAATCCATCACTGACAAGATTTATGGAAATACCCTGTCGATCTCTGTGATAAAGATAGCTGACATTCTTGATGTTGACATATCAAAAGTTGGGGTTACAAAGTTTGGAAGCTTCAGTGTGGAAGTAATAGACCCAGTCTCTGACTATCTGGAGCTATTGGAGACAGTATTCGATTTTCAGCTAATCAAAGGTCTTCTTTCACGTCCAGATTTTAGGTTTATATTTGATGCCATGCATGCAGTTACTGGTGCTTATGCTAAACCCATCTTGGTTGATAAACTCGGTGCTAGTCTGGATTCAATTTCAAATGGAATCCCTTTGGAAGATTTTGGACATGGCCATCCTGATCCTAATCTAACATACGCAAAGGATCTTGTCAACATTCTGTATGCTGAAAATGGACCTGATTTTGGAGCTGCCAGTGATGGGGATGGTGATAGAAATATGATTTTAGGAAGAAGTTTCTTTGTAACTCCTTCAGACTCGGTAGCAGTTATTGCAGCCAATGCAAGAGAAGCGGTTCCATACTTCAAGAATGGTGTTAAGGGTCTTGCTCGATCAATGCCAACAAGTGGTGCTTTGGACCGTGTTGCTGAAAAATTGGACCTCCCTTTCTTTGAGGTCCCCACTGGTTGGAAATTTTTTGGGAATCTTATGGATGCTGGGAATTTGTCGGTTTGCGGGGAAGAAAGTTTTGGAACAGGTTCTGACCACATTCGTGAGAAAGATGGCATTTGGGCTGTCTTAGCTTGGCTTTCTATTATTGCACATCGCAACAAAGACAAGAAGCCAGGGGAGAAATTGATCTCTGTATCTGACATCGTGACAGAGCACTGGGCAACTTATGGAAGGAATTTCTTCTCTAGATATGACTACGAGGAATGTGAATCTGAAGGTGCCAATAAGATGATAGAACACCTACGAGATATTGTGTCTAAGAGCAAGCCTGGTGATCAGTATGGAAGTTATGTCCTCCAGTTTGCAGATGATTTTGCATACACTGATCCTGTAGATGGAAGTGTGGTATCAAAACAAGGTGTTCGGTTTGTTTTTACAGATGGTTCAAGGATTATATATCGTTTATCAGGTACTGGTTCTGCAGGGGCAACTGTTAGAGTGTACATTGAACAGTTTGAACCAGATGTCTCTAAACATGATGTTGATGCTCAAATTGCCTTAAAACCATTAATAGATTTGGCAATATCCATGTCAAAGCTCAAAGACTTCACAGGGAGGGAGAAGCCTACAGTTATCACATAA
Predicted protein sequences of Glyma20g29230
>Glyma20g29230.1   sequence type=predicted peptide   gene model=Glyma20g29230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFSCKLDCFILPAYKPQNSILPLSIQPSSFLPSPSSFKPQKLPFGIRYGSTIRVTSSSSTPSTTIAEPEGIKIKSIPTKPIEGQKTGTSGLRKKVKVFMQDNYLANWIQALFNSLPPEDYKNGLLVLGGDGRYFNREAAQIIIKIAAGNGVGKILVGQEGILSTPAVSAVIRKRKANGGFIMSASHNPGGPEYDWGIKFNYSSGQPAPESITDKIYGNTLSISVIKIADILDVDISKVGVTKFGSFSVEVIDPVSDYLELLETVFDFQLIKGLLSRPDFRFIFDAMHAVTGAYAKPILVDKLGASLDSISNGIPLEDFGHGHPDPNLTYAKDLVNILYAENGPDFGAASDGDGDRNMILGRSFFVTPSDSVAVIAANAREAVPYFKNGVKGLARSMPTSGALDRVAEKLDLPFFEVPTGWKFFGNLMDAGNLSVCGEESFGTGSDHIREKDGIWAVLAWLSIIAHRNKDKKPGEKLISVSDIVTEHWATYGRNFFSRYDYEECESEGANKMIEHLRDIVSKSKPGDQYGSYVLQFADDFAYTDPVDGSVVSKQGVRFVFTDGSRIIYRLSGTGSAGATVRVYIEQFEPDVSKHDVDAQIALKPLIDLAISMSKLKDFTGREKPTVIT*






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